glibc detected --corrupted double-linked lis

Questions regarding the compilation of VASP on various platforms: hardware, compilers and libraries, etc.


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Gu Chenjie
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glibc detected --corrupted double-linked lis

#1 Post by Gu Chenjie » Wed Mar 23, 2011 2:18 am

Hi all, when i run the static calculation, i set the LELF =.Ture, however at the end of runing, the following error happens. Any suggestion is welcome.
Thanks a lot.

Code: Select all

*** glibc detected *** /mirror/bin/vasp: corrupted double-linked list: 0x0000000001fd1af0 ***
======= Backtrace: =========
/lib/libc.so.6[0x2ab603dd69a8]
/lib/libc.so.6[0x2ab603dd6c70]
/lib/libc.so.6[0x2ab603dd9326]
/lib/libc.so.6(__libc_malloc+0x98)[0x2ab603ddaad8]
/mirror/bin/vasp[0xca2c5e]
/mirror/bin/vasp[0xca62e9]
/mirror/bin/vasp[0xc96f9f]
/mirror/bin/vasp[0xc96275]
/mirror/bin/vasp[0x45191d]
/mirror/bin/vasp[0x4de7bc]
/mirror/bin/vasp[0x7f862a]
/mirror/bin/vasp[0x442854]
/mirror/bin/vasp[0x40613c]
/lib/libc.so.6(__libc_start_main+0xe6)[0x2ab603d811a6]
/mirror/bin/vasp[0x406039]
======= Memory map: ========
00400000-00f78000 r-xp 00000000 68:01 975399                             /mirror/bin/vasp
01178000-011c1000 rw-p 00b78000 68:01 975399                             /mirror/bin/vasp
011c1000-01616000 rw-p 011c1000 00:00 0 
01fa5000-04fda000 rw-p 01fa5000 00:00 0                                  [heap]
2ab601952000-2ab60196e000 r-xp 00000000 68:01 360822                     /lib/ld-2.7.so
2ab60196e000-2ab601971000 rw-p 2ab60196e000 00:00 0 
2ab601b6d000-2ab601b6f000 rw-p 0001b000 68:01 360822                     /lib/ld-2.7.so
2ab601b6f000-2ab60210d000 r-xp 00000000 68:0b 73184                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_intel_lp64.so
2ab60210d000-2ab60220d000 ---p 0059e000 68:0b 73184                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_intel_lp64.so
2ab60220d000-2ab60221b000 rw-p 0059e000 68:0b 73184                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_intel_lp64.so
2ab60221b000-2ab60221d000 rw-p 2ab60221b000 00:00 0 
2ab60221d000-2ab602702000 r-xp 00000000 68:0b 73194                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_sequential.so
2ab602702000-2ab602801000 ---p 004e5000 68:0b 73194                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_sequential.so
2ab602801000-2ab60280d000 rw-p 004e4000 68:0b 73194                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_sequential.so
2ab60280d000-2ab60280e000 rw-p 2ab60280d000 00:00 0 
2ab60280e000-2ab60358e000 r-xp 00000000 68:0b 73178                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_core.so
2ab60358e000-2ab60368e000 ---p 00d80000 68:0b 73178                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_core.so
2ab60368e000-2ab6036a0000 rw-p 00d80000 68:0b 73178                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_core.so
2ab6036a0000-2ab6036ae000 rw-p 2ab6036a0000 00:00 0 
2ab6036ba000-2ab6036d0000 r-xp 00000000 68:01 360801                     /lib/libpthread-2.7.so
2ab6036d0000-2ab6038d0000 ---p 00016000 68:01 360801                     /lib/libpthread-2.7.so
2ab6038d0000-2ab6038d2000 rw-p 00016000 68:01 360801                     /lib/libpthread-2.7.so
2ab6038d2000-2ab6038d6000 rw-p 2ab6038d2000 00:00 0 
2ab6038d6000-2ab6038de000 r-xp 00000000 68:01 360840                     /lib/librt-2.7.so
2ab6038de000-2ab603add000 ---p 00008000 68:01 360840                     /lib/librt-2.7.so
2ab603add000-2ab603adf000 rw-p 00007000 68:01 360840                     /lib/librt-2.7.so
2ab603adf000-2ab603ae0000 rw-p 2ab603adf000 00:00 0 
2ab603ae0000-2ab603b62000 r-xp 00000000 68:01 360829                     /lib/libm-2.7.so
2ab603b62000-2ab603d61000 ---p 00082000 68:01 360829                     /lib/libm-2.7.so
2ab603d61000-2ab603d63000 rw-p 00081000 68:01 360829                     /lib/libm-2.7.so
2ab603d63000-2ab603ead000 r-xp 00000000 68:01 360825                     /lib/libc-2.7.so
2ab603ead000-2ab6040ac000 ---p 0014a000 68:01 360825                     /lib/libc-2.7.so
2ab6040ac000-2ab6040af000 r--p 00149000 68:01 360825                     /lib/libc-2.7.so
2ab6040af000-2ab6040b1000 rw-p 0014c000 68:01 360825                     /lib/libc-2.7.so
2ab6040b1000-2ab6040b6000 rw-p 2ab6040b1000 00:00 0 
2ab6040b6000-2ab6040cc000 r-xp 00000000 68:01 360451                     /lib/libgcc_s.so.1
2ab6040cc000-2ab6042cc000 ---p 00016000 68:01 360451                     /lib/libgcc_s.so.1
2ab6042cc000-2ab6042cd000 rw-p 00016000 68:01 360451                     /lib/libgcc_s.so.1
2ab6042cd000-2ab6042ce000 rw-p 2ab6042cd000 00:00 0 
2ab6042ce000-2ab6042d0000 r-xp 00000000 68:01 360828                     /lib/libdl-2.7.so
2ab6042d0000-2ab6044d0000 ---p 00002000 68:01 360828                     /lib/libdl-2.7.so
2ab6044d0000-2ab6044d2000 rw-p 00002000 68:01 360828                     /lib/libdl-2.7.so
2ab6044d2000-2ab6044d4000 rw-p 2ab6044d2000 00:00 0 
2ab6044d4000-2ab61275f000 rw-s 00000000 00:10 88647                      /dev/shm/mpich_shar_tmpgrU23o (deleted)
2ab61275f000-2ab6141c8000 r-xp 00000000 68:0b 73188                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_mc3.so
2ab6141c8000-2ab6142c8000 ---p 01a69000 68:0b 73188                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_mc3.so
2ab6142c8000-2ab61431b000 rw-p 01a69000 68:0b 73188                      /opt/intel/composerxe-2011.0.084/mkl/lib/intel64/libmkl_mc3.so
2ab61431b000-2ab62c1d3000 rw-p 2ab61431b000 00:00 0 
2ab62c1d3000-2ab62c214000 rw-s 00000000 00:10 88708                      /dev/shm/mpich_shar_tmpNJatpq (deleted)
2ab62c214000-2ab62c255000 rw-s 00000000 00:10 88709                      /dev/shm/mpich_shar_tmpcPiusq (deleted)
2ab62c255000-2ab62c296000 rw-s 00000000 00:10 88710                      /dev/shm/mpich_shar_tmpLrR5mq (deleted)
2ab62c296000-2ab62c2d7000 rw-s 00000000 00:10 89902                      /dev/shm/mpich_shar_tmpXKBxol (deleted)
2ab630000000-2ab630021000 rw-p 2ab630000000 00:00 0 
2ab630021000-2ab634000000 ---p 2ab630021000 00:00 0 
7fff2a923000-7fff2ea64000 rwxp 7ffffbebb000 00:00 0                      [stack]
7fff2ea65000-7fff2ea66000 rw-p 7fffffffd000 00:00 0 
7fff2ea7a000-7fff2ea7b000 r-xp 7fff2ea7a000 00:00 0                      [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
forrtl: error (76): Abort trap signal
Image              PC                Routine            Line        Source             
libc.so.6          00002AB603D94ED5  Unknown               Unknown  Unknown
libc.so.6          00002AB603D963F3  Unknown               Unknown  Unknown
libc.so.6          00002AB603DD1408  Unknown               Unknown  Unknown
libc.so.6          00002AB603DD69A8  Unknown               Unknown  Unknown
libc.so.6          00002AB603DD6C70  Unknown               Unknown  Unknown
libc.so.6          00002AB603DD9326  Unknown               Unknown  Unknown
libc.so.6          00002AB603DDAAD8  Unknown               Unknown  Unknown
vasp               0000000000CA2C5E  Unknown               Unknown  Unknown
vasp               0000000000CA62E9  Unknown               Unknown  Unknown
vasp               0000000000C96F9F  Unknown               Unknown  Unknown
vasp               0000000000C96275  Unknown               Unknown  Unknown
vasp               000000000045191D  Unknown               Unknown  Unknown
vasp               00000000004DE7BC  Unknown               Unknown  Unknown
vasp               00000000007F862A  Unknown               Unknown  Unknown
vasp               0000000000442854  Unknown               Unknown  Unknown
vasp               000000000040613C  Unknown               Unknown  Unknown
libc.so.6          00002AB603D811A6  Unknown               Unknown  Unknown
vasp               0000000000406039  Unknown               Unknown  Unknown
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line        Source             
vasp               0000000000CE598E  Unknown               Unknown  Unknown
vasp               0000000000CA6F15  Unknown               Unknown  Unknown
vasp               0000000000CA3446  Unknown               Unknown  Unknown
vasp               0000000000CA62E9  Unknown               Unknown  Unknown
vasp               0000000000C96F9F  Unknown               Unknown  Unknown
vasp               0000000000C96275  Unknown               Unknown  Unknown
vasp               000000000045191D  Unknown               Unknown  Unknown
vasp               00000000004DE7BC  Unknown               Unknown  Unknown
vasp               00000000007F862A  Unknown               Unknown  Unknown
vasp               0000000000442854  Unknown               Unknown  Unknown
vasp               000000000040613C  Unknown               Unknown  Unknown
libc.so.6          00002B54D641F1A6  Unknown               Unknown  Unknown
vasp               0000000000406039  Unknown               Unknown  Unknown
rank 18 in job 4  node0_40901   caused collective abort of all ranks
Last edited by Gu Chenjie on Wed Mar 23, 2011 2:18 am, edited 1 time in total.

Gu Chenjie
Newbie
Newbie
Posts: 18
Joined: Thu Nov 25, 2010 5:41 am

glibc detected --corrupted double-linked lis

#2 Post by Gu Chenjie » Sun Mar 27, 2011 4:54 am

hi. any one can help me.Thanks
Last edited by Gu Chenjie on Sun Mar 27, 2011 4:54 am, edited 1 time in total.

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